I'd say the Vengeance's engineering hull is a lot better shaped for boating/water displacement than any iteration of the Enterprise, but sure. Probably a small case to be made that the "structural integrity fields" that are ubiquitous in the original time line make the collision a lot more inelastic than it looks. Case could also be made the Vengeance doesn't actually leave the water - the ship is big enough it may have done most of the damage with the saucer section while the engineering hull is still in the water. In that case it is the water drag more than the building crushing that brought the whole thing to a halt
Watching it again I had a good chuckle - the building Khan runs past early in the foot chase is the same on used as the Offices in Franklin & Bash.